get_gene_score_neg: Calculate gene negative specific score

In CostaLab/scMarkerDetect: Detect marker panel from scRNA-seq profile

Calculate gene negative specific score

Description

Calculate gene specific score in negative direction

Usage

get_gene_score_neg(
  scrna,
  gene,
  id,
  step = 0.01,
  assay = "RNA",
  slot = "data",
  pseudo.count = 0.01
)

Arguments

scrna	obj to use
gene	gene to use
id	interested cell id
step	quantile step
assay	which assay to use in obj, default RNA
slot	which slot to use, default data

Value

seurat obj with re-set Idents

CostaLab/scMarkerDetect documentation built on May 12, 2022, 6:05 a.m.