get_gene_score_neg.fbeta: Calculate gene positive specific score with FBeta (Hypergate...
In CostaLab/scMarkerDetect: Detect marker panel from scRNA-seq profile

get_gene_score_neg.fbeta

R Documentation

Calculate gene positive specific score with FBeta (Hypergate like approach)

Calculate gene FBeta score with negative direction

get_gene_score_neg.fbeta(
  scrna,
  gene,
  id,
  step = 0.01,
  assay = "RNA",
  slot = "data"
)

`scrna`	obj to use
`gene`	gene to use
`id`	interested cell id
`step`	quantile step
`assay`	which assay to use in obj, default RNA
`slot`	which slot to use, default data
`panel`	ID panel in metadata of obj

seurat obj with re-set Idents

CostaLab/scMarkerDetect documentation built on May 12, 2022, 6:05 a.m.

CostaLab/scMarkerDetect index

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