get_gene_score_neg.fbeta: Calculate gene positive specific score with FBeta (Hypergate...

View source: R/Cell_markers.ident.R

get_gene_score_neg.fbetaR Documentation

Calculate gene positive specific score with FBeta (Hypergate like approach)

Description

Calculate gene FBeta score with negative direction

Usage

get_gene_score_neg.fbeta(
  scrna,
  gene,
  id,
  step = 0.01,
  assay = "RNA",
  slot = "data"
)

Arguments

scrna

obj to use

gene

gene to use

id

interested cell id

step

quantile step

assay

which assay to use in obj, default RNA

slot

which slot to use, default data

panel

ID panel in metadata of obj

Value

seurat obj with re-set Idents


CostaLab/scMarkerDetect documentation built on May 12, 2022, 6:05 a.m.