get_data: Get data

In CshlSiepelLab/DENR: Deconvolution of Expression for Nascent RNA Sequencing Data

Description

Retrives data for plotting. Returned ranges may go a bit outside the queried ones if the overlapping bins do not perfectly align with the user provided boundries

Usage

get_data(data_source, chrom, start, end)

## S4 method for signature 'transcript_quantifier'
get_data(data_source, chrom, start, end)

## S4 method for signature 'character'
get_data(data_source, chrom, start, end)

Arguments

data_source	a transcript_quantifier-class object or string giving the path to a bigwig file
chrom	the chromosome of your query region (single value)
start	the start position of your query region (single value)
end	the end position of your query region (single value)

Value

a GRanges-class objects with the read counts in the value column

CshlSiepelLab/DENR documentation built on July 16, 2021, 10:42 p.m.