get_transcripts: Get target transcripts

Description Usage Arguments Value

View source: R/tq_visualization.R

Description

Retrives transcripts corresponding to a gene or genomic region as a GRanges-class object

Usage

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get_transcripts(
  tq,
  gene_name = NULL,
  chrom = NULL,
  start = NULL,
  end = NULL,
  strand = NULL
)

Arguments

tq

A transcript_quantifier-class object

gene_name

Name of your query gene. Only works if gene ids were given to the transcript_quantifier-class object

chrom

the chromosome of your query region (single value)

start

the start position of your query region (single value)

end

the end position of your query region (single value)

strand

the strand specificity of your query region (default: ANY)

Value

a GRanges-class object


CshlSiepelLab/DENR documentation built on July 16, 2021, 10:42 p.m.