gene_abundance: View gene abundances
In CshlSiepelLab/DENR: Deconvolution of Expression for Nascent RNA Sequencing Data
Description
Produces a table with estimated gene abundances for a given
transcript_quantifier-class object if gene identifiers are
present
Usage
1
2
3
4
gene_abundance(tq, norm_method = c("tpm", "tmm"))
## S4 method for signature 'transcript_quantifier'
gene_abundance(tq, norm_method = c("tpm", "tmm"))
Arguments
tq
A transcript_quantifier-class object
norm_method
type of normalization to use: "tpm" or "tmm". Defaults
to "tpm". Described further in details.
CshlSiepelLab/DENR documentation built on July 16, 2021, 10:42 p.m.
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Description
Produces a table with estimated gene abundances for a given
transcript_quantifier-class object if gene identifiers are
present
Usage
1 2 3 4 | gene_abundance(tq, norm_method = c("tpm", "tmm"))
## S4 method for signature 'transcript_quantifier'
gene_abundance(tq, norm_method = c("tpm", "tmm"))
|
Arguments
tq |
A transcript_quantifier-class object |
norm_method |
type of normalization to use: "tpm" or "tmm". Defaults to "tpm". Described further in details. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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