Description Usage Arguments Author(s)
View source: R/findDuplicates.R
checks 4 letter odor codes for duplications
1 2 3 | findDuplicates(data.object, case = "upper", molsingle = F,
usualsuspects = T, conc0 = T, cut.odors = F, conc.from.bc = F,
conc.from.odor = F)
|
data.object |
input data in gloDatamix format |
case |
transform all to "upper", "lower" or "common" case, (common not implemented yet); or "test" only |
molsingle |
find misspelled MOL recordings (only for single recordings, DONT USE WITH TWINPAL), greps for "mol" and replaces all hits with "mol" |
usualsuspects |
correct for some ususal made misspellings like BJOT BIOT, ALOT AIOT |
conc0 |
set NOConc for "AIR" and "MOL" to 0 |
cut.odors |
remove everything beyond 4 letters from the odor names |
conc.from.bc |
read concentration from barcode – !!handle with care!! |
conc.from.odor |
read concentration from odorfield, assuming is is the last 2 digits – !!!handle with even more care!!! |
Daniel M<c3><bc>nch <daniel@muench.bio>
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