bleachCorrect: bleachCorrect

In Dahaniel/glodatamix: GloDataMix

Description

correct bleaching in gloDatamix data

Usage

bleachCorrect(data.object, rec.frames = NA, bleach.begin = 1,
  bleach.leaveout = NA, weight.BS = 8, weight.AS = 1,
  polcol = "#cccccc", mfrow = c(5, 4), fixedA = NA, fixedB = NA,
  fixedC = NA, ref = "MOL", estimate.B = F, bleach.begin.ref = NA,
  bleach.leaveout.ref = NA, weight.BS.ref = NA, weight.AS.ref = NA,
  diffParms4Ref = F, plot = T, ylim = NULL)

Arguments

data.object	object containing the data
rec.frames	number of frames recorded
bleach.begin	number of the startframe for the fitting (defaults to 1)
bleach.leaveout	numerical vector of frames to leave out for fitting (where the stimulus comes) (e.g.: c(27:65))
weight.BS	how to weight the part before the stimulus
weight.AS	how to weight the part after the stimulus
polcol	color of the weight polygon
mfrow	numeric of length 2, number of rows and columns of plots for PDF output
fixedA	fixed value for tparameter A
fixedB	fixed value for tparameter B
fixedC	fixed value for tparameter C
ref	control to calculate the bleach correction on
estimate.B	estimate parameter B from fits to the control?
bleach.begin.ref	number of the startframe for the fitting (specific for fits to control)
bleach.leaveout.ref	umerical vector of frames to leave out for fitting (where the stimulus comes) (e.g.: c(27:65))
weight.BS.ref	how to weight the part before the stimulus (specific for fits to control)
weight.AS.ref	how to weight the part after the stimulus (specific for fits to control)
diffParms4Ref	define different fitting parameters for the reference (MOL)
plot	plot?
ylim	y limits for plots

Author(s)

Daniel M<c3><bc>nch <[e-mail]>

Dahaniel/glodatamix documentation built on May 6, 2019, 1:21 p.m.