ctvs: ctvs

In Dahaniel/glodatamix: GloDataMix

Description

collection of 'CurveToValue' functions

Usage

ctvs(data.object, ctv.type, rec.frames = NA, bg.firstframe = NA,
  bg.lastframe = NA, sig.firstframe = NA, sig.lastframe = NA,
  wa = c(0.2, 0.7), plot = F, report = F, ylim = NA, mfrow = c(4, 3),
  suffix = "", meanTraces = F, fp = c(29, 37, 41, 49))

Arguments

data.object	input data (gloDatamix format)
ctv.type	type of CTV to calculate
rec.frames	number of frames recorded, will be autodetected if empty
bg.firstframe	for CTVs with background subtraction this is the position of the first bg frame
bg.lastframe	2nd frame for background (end of window)
sig.firstframe	signal onset
sig.lastframe	signal offset
wa	calc "width @" xx*extremum, needs 2 arguments, e.g. width when 0.2 of peakmax is reached to when peak falls to .9 of peakmax
plot	perform a barplot in the end?
report	write CTV report file (gives single traces with signal, bg ... marked and values in legend)
ylim	ylim for report plots, given as 2 value vector, e.g. c(-1,5) plots from -1 to
mfrow	numer of columns and rows to plot per page
suffix	optionally, ad describing suffix to filenames, name of data.object is used when empty
meanTraces	does data come from meanTraces.R?
fp	numerical vector of length 4 giving positions for ctv.w for putative peak on and offset

Author(s)

Daniel M<c3><bc>nch <[e-mail]>

Dahaniel/glodatamix documentation built on May 6, 2019, 1:21 p.m.