normalizeToReference: normalizeToReference

In Dahaniel/glodatamix: GloDataMix

Description

function that fits a curve over reference odors and normalizes to it

Usage

normalizeToReference(data.object, rec.frames = NA, reference.odor, ctv.type,
  bg.firstframe = NA, bg.lastframe = NA, sig.firstframe, sig.lastframe,
  pdf = T, mode = "mean", rescale.data = F, ctvreport = F, glom = NA,
  suffix = "", plot = T)

Arguments

data.object	gloDatamix data.frame
rec.frames	number of recorded frames
reference.odor	your positive reference
ctv.type	the type of ctv used for normalization
bg.firstframe	first frame of background (passed to ctvs())
bg.lastframe	last frame of background (passed to ctvs())
sig.firstframe	first frame of the signal (passed to ctvs())
sig.lastframe	last frame of the signal (passed to ctvs())
pdf	produce a PDF of the fits?
mode	one of 'mean', 'linFit', 'linFitEachGlom'
rescale.data	if FALSE: reference set to 1, if set to TRUE: values are multiplied with first reference value afterwards
ctvreport	create a ctv report PDF?
glom	if specified the data will be normalized on this single glomerulus
suffix	suffix for the filename
plot	plot the fits?

Details

Scheme: 1. subset of reference 2. ctv of reference
3. fit curve over ctv/time
A-4. divide every timepoint of every measurement through corresponding point on fitted curve -> normalized curves
A-5. do ctv for measurements -> normalized ctvs

B-4. do ctv for measurements
B-5. divide every ctv through corresponding point on fitted curve

Author(s)

Daniel M<c3><bc>nch <[e-mail]>

Dahaniel/glodatamix documentation built on May 6, 2019, 1:21 p.m.