Files in DanOvando/sraplus

Run sraplus Assessments

.Rbuildignore

.gitattributes

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/RcppExports.R R/cod.R R/diagnose-sraplus.R R/fit-prior-regressions.R R/fit-sraplus.R R/format-driors.R R/get-posterior.R R/get_prior_posterior.R R/get_tmb_model.R R/plot-driors.R R/plot-prior-posterior.R R/plot-sraplus.R R/sraplus-package.R R/sraplus_simulator.R R/stack-stan.R R/summarize-sraplus.R R/theme-sraplus.R R/utils-pipe.R R/zzz.R README.Rmd README.md

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data-raw/.gitignore

data-raw/DATASET.R

data-raw/Exvessel Price Database.csv

data-raw/FMI data extract by stock for Ray 2018-11-05.xlsx

data-raw/OverlapTable2.csv

data-raw/RAM FMI stocks and taxonomic groupings.xlsx

data-raw/RAM vs FMI.csv

data-raw/RAM-FMI linkages for DO 2019-09-16.xlsx

data-raw/RamStocksWithID2.csv

data-raw/country-to-fao-area.csv

data-raw/fao-to-bell-region.csv

data-raw/fmi_scinames.rds

data-raw/thorson_2012_data.csv

data/Data_Effort_CPUE_forRH.csv

data/FlounderTimeseries.xlsx

data/catch_b_model.rda

data/class_fit.rda

data/cluster_fit.rda

data/cod.rda

data/fao_taxa.rda

data/fmi.rda

data/fmi_models.rda

data/init_state_model.rda

data/ram_fmi.rda

data/sar.rda

data/sar_models.rda

data/sraplus-template.xlsx

data/ssb0msy_to_ssb0.rda

docs/404.html

docs/LICENSE-text.html

docs/_config.yml

docs/articles/index.html

docs/articles/sraplus.html

docs/articles/sraplus_files/figure-html/c-msy-3-1.png

docs/articles/sraplus_files/figure-html/cpue-fit-1-1.png

docs/articles/sraplus_files/figure-html/fmi-sar-1-1.png

docs/articles/sraplus_files/figure-html/fmi-sar-2-1.png

docs/articles/sraplus_files/figure-html/sim-index-1-1.png

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docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/cod.html

docs/reference/diagnose_sraplus.html

docs/reference/fit_sraplus.html

docs/reference/format_driors.html

docs/reference/get_posterior.html

docs/reference/get_tmb_model.html

docs/reference/index.html

docs/reference/plot_driors.html

docs/reference/plot_sraplus.html

docs/reference/sraplus-package.html

docs/reference/stack_stan.html

docs/reference/theme_sraplus.html

inst/tmb/sraplus_tmb.cpp

man/cod.Rd man/diagnose_sraplus.Rd man/fit_prior_regressions.Rd man/fit_sraplus.Rd man/format_driors.Rd man/get_posterior.Rd man/get_prior_posterior.Rd man/get_tmb_model.Rd man/pipe.Rd man/plot_driors.Rd man/plot_prior_posterior.Rd man/plot_sraplus.Rd man/sraplus-package.Rd man/sraplus_simulator.Rd man/stack_stan.Rd man/summarize_sralpus.Rd man/theme_sraplus.Rd

src/.gitignore

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/sraplus.cpp

src/sraplus_reserve.cpp

test_sraplus.R test_sraplus_on_ram.R tests/testthat.R tests/testthat/test-fishlife.R tests/testthat/test-sir.R tests/testthat/test-stan.R

vignettes/.gitignore

vignettes/prior-tuning.Rmd vignettes/sraplus.Rmd

DanOvando/sraplus documentation built on Oct. 15, 2020, 3:10 a.m.