Files in DanOvando/sraplus
Run sraplus Assessments

.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/RcppExports.R R/cod.R R/diagnose-sraplus.R R/fit-prior-regressions.R R/fit-sraplus.R R/format-driors.R R/get-posterior.R R/get_tmb_model.R R/plot-driors.R R/plot-prior-posterior.R R/plot-sraplus.R R/sraplus-package.R R/sraplus_simulator.R R/stack-stan.R R/summarize-sraplus.R
R/sysdata.rda
R/theme-sraplus.R R/zzz.R README.Rmd README.md
README_files/figure-gfm/c-msy-3-1.png
README_files/figure-gfm/cpue-fit-1-1.png
README_files/figure-gfm/fmi-sar-1-1.png
README_files/figure-gfm/fmi-sar-2-1.png
README_files/figure-gfm/sim-index-1-1.png
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data-raw/.gitignore
data-raw/DATASET.R
data-raw/Exvessel Price Database.csv
data-raw/FMI data extract by stock for Ray 2018-11-05.xlsx
data-raw/OverlapTable2.csv
data-raw/RAM FMI stocks and taxonomic groupings.xlsx
data-raw/RAM vs FMI.csv
data-raw/RAM-FMI linkages for DO 2019-09-16.xlsx
data-raw/RamStocksWithID2.csv
data-raw/country-to-fao-area.csv
data-raw/fao-to-bell-region.csv
data-raw/fmi_scinames.rds
data-raw/ram.RData
data/Data_Effort_CPUE_forRH.csv
data/FlounderTimeseries.xlsx
data/cod.rda
data/fao_taxa.rda
data/fmi.rda
data/fmi_models.rda
data/ram_fmi.rda
data/sar.rda
data/sar_models.rda
data/sraplus-template.xlsx
docs/404.html
docs/LICENSE-text.html
docs/_config.yml
docs/articles/index.html
docs/articles/sraplus.html
docs/articles/sraplus_files/figure-html/c-msy-3-1.png
docs/articles/sraplus_files/figure-html/cpue-fit-1-1.png
docs/articles/sraplus_files/figure-html/fmi-sar-1-1.png
docs/articles/sraplus_files/figure-html/fmi-sar-2-1.png
docs/articles/sraplus_files/figure-html/sim-index-1-1.png
docs/articles/sraplus_files/figure-html/unnamed-chunk-10-1.png
docs/articles/sraplus_files/figure-html/unnamed-chunk-10-2.png
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docs/articles/sraplus_files/figure-html/unnamed-chunk-17-1.png
docs/articles/sraplus_files/figure-html/unnamed-chunk-9-1.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/cod.html
docs/reference/diagnose_sraplus.html
docs/reference/fit_sraplus.html
docs/reference/format_driors.html
docs/reference/get_posterior.html
docs/reference/get_tmb_model.html
docs/reference/index.html
docs/reference/plot_driors.html
docs/reference/plot_sraplus.html
docs/reference/sraplus-package.html
docs/reference/stack_stan.html
docs/reference/theme_sraplus.html
inst/tmb/sraplus_tmb.cpp
man/cod.Rd man/diagnose_sraplus.Rd man/fit_sraplus.Rd man/format_driors.Rd man/get_posterior.Rd man/get_tmb_model.Rd man/plot_driors.Rd man/plot_sraplus.Rd man/sraplus-package.Rd man/stack_stan.Rd man/theme_sraplus.Rd
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/sraplus.cpp
test.pdf test_sraplus.R tests/testthat.R tests/testthat/test-fishlife.R tests/testthat/test-sir.R tests/testthat/test-stan.R
vignettes/.gitignore
vignettes/sraplus.Rmd
DanOvando/sraplus documentation built on Nov. 6, 2019, 4:31 p.m.