FishBase_and_RAM: Database of stock-recruit, population-dynamics, size, growth,...

In DanOvando/sraplus: Run sraplus Assessments

Database of stock-recruit, population-dynamics, size, growth, maturity, and mortality parameters. Pull Pulled from Thorson's FishLife package on 2022/03/06, as loading FishLife itself generated far too many dependencies. Will consider fix at later date

Description

Output from Fit_model applied to database scraped from www.FishBase.org using rfishbase as well as RAM Legacy stock-recruit database

Usage

FishBase_and_RAM

Format

A tagged list containing data and predictions

N_factors

Number of factors used for evolution in life-history model

N_obsfactors

Number of factors used for measurent-error in life-history model

beta_gv

Predictive mean (in transformed space) among traits for every taxon in tree

Cov_gvv

Covariance among traits for every taxon in tree

Use_REML

Boolean, whether REML was used for model

ParentChild_gz

Record of taxonomic tree

ParHat

Parameter estimates and predictions

g_i

Associates every observation with a level of the taxonomic tree

Y_ij

Life-history parameters from FishBase

Z_ik

Taxonomy for each datum

SR_obs

Stock-recruit records from RAM Legacy stock-recruit database

StockData

Auxiliary information for every stock with stock-recruit information

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DanOvando/sraplus documentation built on July 22, 2023, 12:03 p.m.