dsd_4d_modules: Get the available 4-domain modules for DSD script

In DanielKneipp/DNAr: Simulates chemical reaction networks constructed with DNA

Get the available 4-domain modules for DSD script

Description

This function returns a matrix with all available 4-domain modules for the DSD script. The matrix is organized based on the reaction stoichiometry.

Usage

dsd_4d_modules()

Details

If a reaction has 2 reactants and 1 product, will be in the position 3,2. The formation reactions are in the line 1, and the degradation reactions are in the column 1 ([[,1]]).

The position [[1,1]] is filled with NA because it represents an invalid reaction (0 -> 0).

[[,1]: R:[,1 [[1,1]: R:[1,1

Value

The matrix of functions which can be accesses with [[i,j]]

[[i,j]: R:[i,j

DanielKneipp/DNAr documentation built on Jan. 7, 2023, 12:42 p.m.