get_neuron_binding_hje: Get a binding of two neurons

In DanielKneipp/DNAr: Simulates chemical reaction networks constructed with DNA

Get a binding of two neurons

Description

This function generates a CRN which represents a binding between two neurons returned by get_neuron_hje(). The output of the neuron 1 will be binded to the input of neuron 2. The default values of enzyme_config and ci define a binding which is capable of activate the next neuron without dependence of any other binding.

Usage

get_neuron_binding_hje(neuron1, neuron2, enzyme_config = list(ci = 2/3, k =
  c(200, 100)), ci = 4/3, bind_inhibitory = FALSE)

Arguments

neuron1	The CRN which defines the neuron 1
neuron2	The CRN which defines the neuron 2
enzyme_config	A list with the following parameters: ci: the initial concentration of the enzyme; k: a vector with the rate constants of forward and backward reactions, respectively.
ci	The initial concentration of the C species (the the binding output which will be used as input of neuron 2).
bind_inhibitory	If TRUE, the inhibitory signal B will be binded instead of the activatory one A.

Details

The binding is made by creating the reaction E_{ij} + A_{j} -> C_{ij}.

Value

The binding CRN.

DanielKneipp/DNAr documentation built on Jan. 7, 2023, 12:42 p.m.