Files in DavisWeaver/crosstalkr
Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/RandomWalkRepeats.R
R/RcppExports.R
R/calc_np.R
R/create_null.R
R/crosstalkr-package.R
R/filter.R
R/node_suppression.R
R/np_pipeline.R
R/plot.R
R/ppi_ingest.R
R/utils.R
README.md
crosstalkr.Rproj
inst/species_reference.Rda
inst/test_data/EWS_NullDist.Rda
inst/test_data/EWS_final.Rda
inst/test_data/entrez_break.Rda
inst/test_data/ex_ensembl_vec.Rda
inst/test_data/sj_final.Rda
inst/test_data/stringdb.Rda
inst/test_data/toy_combine.Rda
inst/test_data/toy_graph.Rda
man/add_expression.Rd
man/add_value.Rd
man/as_gene_symbol.Rd
man/bootstrap_null.Rd
man/calc_dnp_i.Rd
man/calc_np.Rd
man/calc_np_all.Rd
man/calc_np_all_legacy.Rd
man/calc_np_i.Rd
man/check_crosstalk.Rd
man/combine_null.Rd
man/compute_crosstalk.Rd
man/compute_dnp.Rd
man/compute_np.Rd
man/compute_null_dnp.Rd
man/crosstalk_subgraph.Rd
man/crosstalkr.Rd
man/detect_inputtype.Rd
man/dist_calc.Rd
man/ensembl_type.Rd
man/experiment_breakout.Rd
man/fcalc_np_all.Rd
man/final_combine.Rd
man/final_dist_calc.Rd
man/get_neighbors.Rd
man/get_random_graph.Rd
man/get_topn.Rd
man/gfilter.Rd
man/gfilter.ct.Rd
man/gfilter.igraph_method.Rd
man/gfilter.np.Rd
man/gfilter.value.Rd
man/is_ensembl.Rd
man/is_entrez.Rd
man/load_ppi.Rd
man/match_seeds.Rd
man/node_repression.Rd
man/norm_colsum.Rd
man/plot_ct.Rd
man/ppi_intersection.Rd
man/ppi_union.Rd
man/prep_biogrid.Rd
man/prep_stringdb.Rd
man/sparseRWR.Rd
man/supported_species.Rd
man/tidy_expression.Rd
man/to_taxon_id.Rd
src/.gitignore
src/RcppExports.cpp
src/RcppExports.o
src/calc_np.cpp
src/calc_np.o
src/crosstalkr.dll
tests/testthat.R
tests/testthat/test-RandomWalkRepeats.R
tests/testthat/test-calc_np.R
tests/testthat/test-create_null.R
tests/testthat/test-filter.R
tests/testthat/test-node_suppression.R
tests/testthat/test-plot.R
tests/testthat/test-ppi_ingest.R
tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/crosstalkr_vignette.Rmd
vignettes/rsconnect/documents/crosstalkr_vignette.Rmd/rpubs.com/rpubs/Document.dcf
