prep_stringdb: Prepare Stringdb for use in analyses

In DavisWeaver/crosstalkr: Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks

Prepare Stringdb for use in analyses

Description

Basically a wrapper around the get_graph method from the stringdb package

Usage

prep_stringdb(
  cache = NULL,
  edb = "default",
  min_score = 200,
  version = "11.5",
  species = "homo sapiens"
)

Arguments

cache	A filepath to a folder downloaded files should be stored
edb	ensemble database object
min_score	minimum connectivity score for each edge in the network.
version	stringdb version
species	species code either using latin species name or taxon id

Value

igraph object built from the adjacency matrix downloaded from stringdb.

DavisWeaver/crosstalkr documentation built on May 6, 2024, 6:09 p.m.