match_seeds: Identify random sets of seeds with similar degree...

In DavisWeaver/crosstalkr: Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks

Identify random sets of seeds with similar degree distribution to parent seed proteins

Description

This function will generate n character vectors of seeds to be passed to sparseRWR as part of the construction of a boostrapped null distribution for significance testing.

Usage

match_seeds(g, seed_proteins, n, set_seed = NULL)

Arguments

g	igraph object representing the network under study. specified by "ppi" in bootstrap_null
seed_proteins	user defined seed proteins
n	number of random walks with repeats to create null distribution
set_seed	integer to set random number seed - for reproducibility

Value

list of character vectors: randomly generated seed proteins with a similar degree distribution to parent seed proteins

DavisWeaver/crosstalkr documentation built on May 6, 2024, 6:09 p.m.