gfilter.np: Method to filter graph based on network potential values.

In DavisWeaver/crosstalkr: Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks

Method to filter graph based on network potential values.

Description

convenience function - it just calls gfilter.value after computing np

Usage

gfilter.np(g, val, use_ppi = TRUE, n = 500, desc, ...)

Arguments

g	igraph object
val	named numeric vector - some measure of node state (i.e. gene expression in the case of a PPI)
use_ppi	bool - should we use a ppi from online repository?
n	int - number of nodes to include in the returned subgraph
desc	bool - do we want the top or bottom examples of the provided metric
...	additional params passed to load_ppi() or compute_crosstalk()

Details

For more information on network potential, see related paper

Value

igraph

DavisWeaver/crosstalkr documentation built on May 6, 2024, 6:09 p.m.