Man pages for DawnEve/GEB
A R pkg to decorate Seurat output (single-cell RNA-seq tool)
| convertH2M | convert human genes to mouse genes. |
| DimPlot_my | Draw UMAP or tSNE plot with circle backgrounded text |
| DimPlot_my2 | Draw UMAP, my method 2 |
| DoHeatmap_my | heatmap of average expression, by cluster |
| DotPlot_ByColumnList | facet_grid DotPlot by column, only accept named marker gene... |
| DotPlot_my | My enhanced DotPlot |
| DotPlot_my2 | My enhanced DotPlot |
| DoVlnPlot_stack | Plot stack violin plot from Seurat object |
| FeaturePlot_my | enhenced FeaturePlot, with one unified legend color-bar. |
| Feature_scale_PCA_all | shortcut: HVG, Scale(all), PCA |
| Feature_scale_PCA_variable | shortcut: HVG, Scale(HVG), PCA |
| FindMarkersDIY | FindMarkersDIY, quick version |
| getGeneScoreValue | Calc gene score |
| getLongDf | get 3col-df (exp value/ gene symbol / cluster id) for stack... |
| getSankeyData | Make Sankey plot data from a table(paraLeft, paraRight) |
| hello | default test function |
| meanNFeatureByCluster | Show nGene hist plot in each cluster |
| my_pie | Using a dataframe specific column to plot a pie figure |
| Neighbor_cluster_umap_tsne | shortcut: cell Cluster, UMAP |
| nFeature.hist | hist plot of nFeature in each cluster |
| nFeatureScatter | 2D FACS like scatter plot |
| plotGeneScore | plot violin plot of gene score among groups(ggplot2) |
| plot_PC_on_UMAP | Plot cell PC score as color on UMAP plot |
| print.GEB_lite | 回车直接画 grid 图形 |
| Q_cellNumber | 每个亚群中的细胞数量饼图 |
| QC_nGene_nUMI_expr | plot gene expression level with color, on nGene x nUMI plot |
| Q_sankey | 快速桑基图，预览几种分类方法的来源和去向 |
| sankeyPlot | Sankey plot from sankeyDt, produced by getSankeyData() |
| showCluster | Show the position of a cluster on umap |
| SingleCorPlot | SingleCorPlot |
| table2barplot | draw barplot, from a data.frame generated by table(para1,... |
| VlnPlot_stack | Plot stacked violin plot using 3col-df(value/ gene/ cluster) |
