DotPlot_ByColumnList: facet_grid DotPlot by column, only accept named marker gene...

In DawnEve/GEB: A R pkg to decorate Seurat output (single-cell RNA-seq tool)

facet_grid DotPlot by column, only accept named marker gene list.

Description

v0.3 模仿张泽民实验室的图(https://pubmed.ncbi.nlm.nih.gov/34914499/ Fig.2A)，竖排，分面方框

Usage

DotPlot_ByColumnList(
  object,
  features,
  scale = TRUE,
  scale.by = "radius",
  idents = NULL,
  cluster.idents = FALSE,
  base_size = list(),
  cols = NULL,
  direction = 1,
  col.min = -2.5,
  col.max = 2.5,
  dot.min = 0,
  dot.scale = 6,
  scale.min = NA,
  scale.max = NA,
  group.by = NULL,
  split.by = NULL
)

Arguments

object	Seurat obj
features	a list of named marker genes
scale	scale?
scale.by	scale method
idents	idents to use
cluster.idents	whether cluster idents
base_size	font size
cols	colors of gene expression
direction	color RColorBrewer direction
col.min	min?
col.max	max?
dot.min	dot size min
dot.scale	dot max size
scale.min	min?
scale.max	max?
group.by	group by
split.by	split by

Examples

DotPlot_ByColumnList(scObj_colon, features = common_markers)

DawnEve/GEB documentation built on July 6, 2022, 7:05 p.m.