DimPlot_my: Draw UMAP or tSNE plot with circle backgrounded text

In DawnEve/GEB: A R pkg to decorate Seurat output (single-cell RNA-seq tool)

Draw UMAP or tSNE plot with circle backgrounded text

Description

Draw UMAP or tSNE plot with circle backgrounded text

Usage

DimPlot_my(
  sce,
  group.by = "seurat_clusters",
  reduction = "umap",
  isRaster = T,
  show.legend = F,
  theme.use = theme_classic,
  par.geom_point = list(size = 0.3),
  par.geom_text = list(size = 4, color = "black"),
  par.circle = list(size = 10, stroke = 1.2, fill = "#FFFFFF66"),
  title = "UMAP plot",
  colSet = NULL
)

Arguments

sce	Seurat obj
group.by	group by
reduction	reduction method
isRaster	is raster?
show.legend	default not show legend
theme.use	which theme
par.geom_point	geom_point parameters
par.geom_text	geom_text parameters
par.circle	circle parameters
title	main title of the figure
colSet	color list

Examples

DimPlot_my(sce, title="pbmc_3k") #default umap
DimPlot_my(sce, reduction = "tsne", title="pbmc_3k tSNE") #tsne
DimPlot_my(sce, reduction = "pca", title="pbmc_3k PCA") #pca

DawnEve/GEB documentation built on July 6, 2022, 7:05 p.m.