CWRsimSPEC: Community Wide evolutionary Rescue simulation (CWR), with...

In DeadParrot69/CWERNI: Community Wide Evolutionary Rescue Neutral Implementation

Description

Community Wide evolutionary Rescue simulation (CWR), with certain precise timepoints saved

Usage

CWRsimSPEC(tmax, b1, d1, b2, d2, m12, m21, k1, abun_original, interval,
  wantedtimes)

Arguments

tmax	Arbitrary units of time the simulation should be run
b1	Birthrate of the mutants
d1	Deathrate of the mutants
b2	Birthrate of the residents
d2	Death rate of the residents
m12	Mutation rate of mutants to residents
m21	Mutation rate of residents to mutants
k1	Carrying capacity
abun_original	A vector of initial abundances for each species such as those created by generate_spat_abund
interval	After how many evenst should the population state be saved to the output matrix
wantedtimes	The preciese timepoints that should be saved

Value

A matrix denoting the abundances of all the species in the community over time, with certain precise timpoints saved

Author(s)

Timo van Eldijk

Examples

CWRsimSPEC(10,0.6 , 0.1, 0.05, 0.1, 0, 0.0005, 16000,
generate_spat_abund(theta = 200,Ivec = rep(40,1),Jvec = c(16000)),
 200,c(15,30,50,75,100))

DeadParrot69/CWERNI documentation built on April 21, 2020, 3:10 a.m.