simbvarSPEC: Simulate a neutral community with a variable birthrate (VBN),...

In DeadParrot69/CWERNI: Community Wide Evolutionary Rescue Neutral Implementation

Description

Simulate a neutral community with a variable birthrate (VBN), saving certain precise timepoints

Usage

simbvarSPEC(tmax, b1, d1, k1, bneck, kneckstart, kneckend, abun_original,
  interval, wantedtimes)

Arguments

tmax	Arbitrary units of time the simulation should be run
b1	Normal birthrate
d1	Deathrate
k1	Carrying capacity
bneck	Birthrate during the bottleneck
kneckstart	Timepoint at which the bottleneck starts
kneckend	Timepoint at which the bottleneck ends
abun_original	A vector of initial abundances for each species such as those created by generate_spat_abund
interval	After how many evenst should the population state be saved to the output matrix
wantedtimes	The specific timepoints that should be included in the final matrix

Value

A matrix denoting the abundances of all the species in the community over time, with certain specific timepoints saved (wantedtimes)

Author(s)

Timo van Eldijk

Examples

simbvarSPEC( 10, 0.6, 0.1, 16000, 0.05,0, 5,
generate_spat_abund(theta = 200,Ivec = rep(40,1),Jvec = c(16000)),
200,c(15,30,50,75,100))

DeadParrot69/CWERNI documentation built on April 21, 2020, 3:10 a.m.