multisimbvarSPEC: Simulate multiple neutral communities with a variable...

In DeadParrot69/CWERNI: Community Wide Evolutionary Rescue Neutral Implementation

Description

Simulate multiple neutral communities with a variable birthrate (VBN) saving specific timepoints and also saving the output matrix for every simulation

Usage

multisimbvarSPEC(tmax, b1, d1, k1, bneck, kneckstart, kneckend,
  abun_original, nsim, interval, wantedtimes)

Arguments

tmax	Arbitrary units of time the simulation should be run
b1	Normal birthrate
d1	Deathrate
k1	Carrying capacity
bneck	Birthrate during the bottleneck
kneckstart	Timepoint at which the bottleneck starts
kneckend	Timepoint at which the bottleneck ends
abun_original	A vector of initial abundances for each species such as those created by generate_spat_abund
nsim	number of simulations that should be performed
interval	After how many evenst should the population state be saved to the output matrix
wantedtimes	Specific timepoints for which the RAC is to be plotted

Value

this function plots the RAC of the simulations for the times specified in Wantedtimes as .tiff files in the current working directory also writes a .csv file outputting the poplation matrix for every simulation performed

Author(s)

Timo van Eldijk

Examples

multisimbvarSPEC(10, 0.6, 0.1, 16000, 0.05, 0, 5,
generate_spat_abund (theta = 200,Ivec = rep(40,1),Jvec = c(16000)),2,
200, c(15,30,50,75,100))

DeadParrot69/CWERNI documentation built on April 21, 2020, 3:10 a.m.