Description Usage Arguments Author(s) See Also Examples
Plot each compensation control in all fluorescent channels to identify any potential compensation issues. The unstained control is overlaid in black as a reference.
1 2 3 4 5 |
x |
object of class |
channel_match |
name of the fluorescent channel associated with the
|
compensate |
logical indicating whether the samples should be compensated prior to plotting, set to FALSE by default. If no spillover matrix is supplied to the spillover_file argument the spillover matrix will extracted from the samples. |
spillover |
name of spillover matrix csv file including .csv file
extension to apply to sample when |
axes_trans |
object of class
|
layout |
vector of grid dimensions |
popup |
logical indicating whether plots should be constructed in a pop-up window. |
title |
text to include above each plot, set to NA by default to remove titles. |
header |
title to use for the plots, set to the name of the sample by default. |
header_text_font |
font to use for header text, set to 2 by default. |
header_text_size |
text size for header, set to 1 by default. |
header_text_col |
colour for header text, set to "black" by default. |
... |
additional arguments passed to
|
Dillon Hammill (Dillon.Hammill@anu.edu.au)
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 | library(CytoRSuiteData)
# Don't run - bypass directory check for external files
options("CytoRSuite_wd_check" = FALSE)
# Load in compensation controls
gs <- GatingSet(Compensation)
# Gate single cells using gate_draw
gt <- Compensation_gatingTemplate
gating(gt, gs)
# Compensation plots
cyto_plot_compensation(getData(gs, "Single Cells")[[1]],
channel_match = "7-AAD-A",
overlay = getData(gs, "Single Cells")[[4]]
)
# Don't run - return "CytoRSuite_wd_check" to default
options("CytoRSuite_wd_check" = TRUE)
|
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