Man pages for DillonHammill/cytoSuite
Compensation, Gating & Visualisation Toolkit for Analysis of Flow Cytometry Data
| cyto_annotate | Interactively edit pData Information for a flowSet or... |
| cyto_channel_check | Check Supplied Channels |
| cyto_channel_check-flowFrame-method | Check Supplied Channels - flowFrame Method |
| cyto_channel_check-flowSet-method | Check Supplied Channels - flowSet Method |
| cyto_channel_check-GatingSet-method | Check Supplied Channels - GatingSet Method |
| cyto_channel_select | Select Fluorescent Channel for Compensation Controls |
| cyto_channel_select-flowFrame-method | Select Fluorescent Channel for Compensation Controls -... |
| cyto_channel_select-flowSet-method | Select Fluorescent Channel for Compensation Controls -... |
| cyto_channel_select-GatingSet-method | Select Fluorescent Channel for Compensation Controls -... |
| cyto_fluor_channels | Extract Fluorescent Channels |
| cyto_fluor_channels-flowFrame-method | Extract Fluorescent Channels - flowFrame Method |
| cyto_fluor_channels-flowSet-method | Extract Fluorescent Channels - flowSet Method |
| cyto_fluor_channels-GatingSet-method | Extract Fluorescent Channels - GatingSet Method |
| cyto_markers | Assign marker names to flowFrame or flowSet |
| cyto_plot | cyto_plot |
| cyto_plot_compensation | Plot Compensation in All Fluorescent Channels |
| cyto_plot_compensation-flowFrame-method | Plot Compensation in All Fluorescent Channels - flowFrame... |
| cyto_plot_compensation-flowSet-method | Plot Compensation in All Fluorescent Channels - flowSet... |
| cyto_plot_compensation-GatingSet-method | Plot Compensation in All Fluorescent Channels - GatingSet... |
| cyto_plot_contour | Contour Lines for cyto_plot |
| cyto_plot_contour-flowFrame-method | Contour Lines for cyto_plot - flowFrame Method |
| cyto_plot_contour-flowSet-method | Contour Lines for cyto_plot - flowSet Method |
| cyto_plot_contour-list-method | Contour Lines for cyto_plot - list Method |
| cyto_plot-flowFrame-method | cyto_plot - flowFrame Method |
| cyto_plot-flowSet-method | cyto_plot - flowSet Method |
| cyto_plot_gate | Plot Gate Objects onto an Existing Plot |
| cyto_plot_gate-ellipsoidGate-method | Plot ellipsoidGate Objects onto an Existing Plot |
| cyto_plot_gate-filters-method | Plot filters List of Gate Objects onto an Existing Plot |
| cyto_plot_gate-list-method | Plot List of Gate Objects onto an Existing Plot |
| cyto_plot_gate-polygonGate-method | Plot polygonGate Objects onto an Existing Plot |
| cyto_plot_gate-rectangleGate-method | Plot rectangleGate Objects onto an Existing plot |
| cyto_plot-GatingHierarchy-method | cyto_plot - GatingHierarchy Method |
| cyto_plot_gating_scheme | Plot Flow Cytometry Gating Strategies |
| cyto_plot_gating_scheme-GatingHierarchy-method | Plot Flow Cytometry Gating Strategies - GatingHierarchy... |
| cyto_plot_gating_scheme-GatingSet-method | Plot Flow Cytometry Gating Strategies - GatingSet Method |
| cyto_plot-GatingSet-method | cyto_plot - GatingSet Method |
| cyto_plot_label | Add boxed text labels to cyto_plot |
| cyto_plot_label-flowFrame-ANY-method | Add boxed text labels to cyto_plot without gate |
| cyto_plot_label-flowFrame-ellipsoidGate-method | Add boxed text labels to cyto_plot - ellipsoidGate Method |
| cyto_plot_label-flowFrame-filters-method | Add boxed text labels to cyto_plot - filters Method |
| cyto_plot_label-flowFrame-list-method | Add boxed text labels to cyto_plot - list Method |
| cyto_plot_label-flowFrame-polygonGate-method | Add boxed text labels to cyto_plot - polygonGate Method |
| cyto_plot_label-flowFrame-rectangleGate-method | Add boxed text labels to cyto_plot - rectangleGate Method |
| cyto_plot_overlay | Overlay Points on cyto_plot |
| cyto_plot_overlay-flowFrame-method | Overlay Points on cyto_plot - flowFrame Method |
| cyto_plot_overlay-flowSet-method | Overlay Points on cyto_plot - flowSet Method |
| cyto_plot_overlay-list-method | Overlay Points on cyto_plot - list Method |
| cyto_plot_profile | Plot Expression Profile in All Fluorescent Channels |
| cyto_plot_profile-flowFrame-method | Plot Expression Profile in All Fluorescent Channels -... |
| cyto_plot_profile-flowSet-method | Plot Expression Profile in All Fluorescent Channels - flowSet... |
| cyto_plot_profile-GatingSet-method | Plot Expression Profile in All Fluorescent Channels -... |
| cyto_sample | Sample a flowFrame |
| cyto_stats_compute | Compute Statistics |
| cyto_stats_compute-flowFrame-method | Compute Statistics - flowFrame Method |
| cyto_stats_compute-flowSet-method | Compute Statistics - flowSet Method |
| cyto_stats_compute-GatingSet-method | Compute Statistics - GatingSet Method |
| cyto_trans_check | Check Transformation List Object |
| gate_boundary_draw | Draw Boundary Gate(s) Around Populations. |
| gate_draw | gate_draw |
| gate_draw-flowFrame-method | gate_draw flowFrame Method. |
| gate_draw-flowSet-method | gate_draw flowSet Method |
| gate_draw-GatingSet-method | gate_draw GatingSet Method |
| gate_edit | Edit Existing Gate(s). |
| gate_ellipse_draw | Draw Ellipsoid Gate(s) Around Populations. |
| gate_extract | Extract Saved Gate(s) from gatingTemplate. |
| gate_interval_draw | Draw Interval Gate(s) Around Populations. |
| gate_polygon_draw | Draw Polygon Gate(s) Around Populations. |
| gate_quadrant_draw | Draw Quadrant Gates Around Populations. |
| gate_rectangle_draw | Draw Rectangle Gate(s) Around Populations. |
| gate_remove | Remove Gate(s) and Edit gatingTemplate csv File |
| gate_threshold_draw | Draw Threshold Gate(s) Around Populations. |
| gate_type | Get Gate Type from Saved Gate. |
| gate_web_draw | Draw Web Gates Around Populations. |
| gatingTemplate_convert | Convert Old gatingTemplates to New Format |
| gatingTemplate_edit | Interactively Edit a gatingTemplate |
| spillover_compute | Compute Spillover Matrix |
| spillover_compute-flowSet-method | Compute Spillover Matrix - flowSet Method |
| spillover_compute-GatingSet-method | Compute Spillover Matrix - GatingSet Method |
| spillover_edit | Edit Spillover Matrix |
| spillover_edit-flowSet-method | Edit Spillover Matrix - flowSet Method |
| spillover_edit-GatingSet-method | Edit Spillover Matrix GatingSet Method |
