Man pages for DillonHammill/cytoSuite
Compensation, Gating & Visualisation Toolkit for Analysis of Flow Cytometry Data

ActivationActivation
axisLabelsGet Appropriate Axes Labels for Transformed Channels -...
axisLabels-flowFrame-methodGet Appropriate Axes Labels for Transformed Channels -...
axisLabels-GatingHierarchy-methodGet Appropriate Axes Labels for Transformed Channels -...
checkChannelsCheck Supplied Channels
checkChannels-flowFrame-methodCheck Supplied Channels - flowFrame Method
checkChannels-flowSet-methodCheck Supplied Channels - flowSet Method
checkChannels-GatingSet-methodCheck Supplied Channels - GatingSet Method
checkOSGDCheck Operating System & Open New Graphics Device
checkTemplateCheck gatingTemplate for Existing Entry
computeSpilloverCompute Spillover Matrix
computeSpillover-flowSet-methodCompute Spillover Matrix - flowSet Method
computeSpillover-GatingSet-methodCompute Spillover Matrix - GatingSet Method
computeStatsCompute Statistics
computeStats-flowFrame-methodCompute Statistics - flowFrame Method
computeStats-flowSet-methodCompute Statistics - flowSet Method
computeStats-GatingSet-methodCompute Statistics - GatingSet Method
drawBoundaryDraw Boundary(s) to Gate Flow Cytometry Populations.
drawEllipseDraw Ellipse(s) to Gate Flow Cytometry Populations.
drawGatedrawGate
drawGate-flowFrame-methoddrawGate flowFrame Method.
drawGate-flowSet-methoddrawGate flowSet Method
drawGate-GatingSet-methoddrawGate GatingSet Method
drawIntervalDraw Interval(s) to Gate Flow Cytometry Populations.
drawPolygonDraw Polygon(s) to Gate Flow Cytometry Populations.
drawQuadrantsDraw Quadrants to Gate Multiple Flow Cytometry Populations.
drawRectangleDraw Rectangles to Gate Flow Cytometry Populations.
drawThresholdDraw Threshold(s) to Gate Flow Cytometry Populations.
drawWebDraw Web to Gate Multiple Flow Cytometry Populations.
editGateEdit Existing Gate(s).
editSpilloverEdit Spillover Matrix
editSpillover-flowSet-methodEdit Spillover Matrix - flowSet Method
editSpillover-GatingSet-methodEdit Spillover Matrix GatingSet Method
extractGateExtract Saved Gate(s) from gatingTemplate.
gate_drawdrawGate Plugin for openCyto
gate_manualApply Stored Gates to GatingSet
getChannelsExtract Fluorescent Channels
getChannels-flowFrame-methodExtract Fluorescent Channels - flowFrame Method
getChannels-flowSet-methodExtract Fluorescent Channels - flowSet Method
getChannels-GatingSet-methodExtract Fluorescent Channels - GatingSet Method
getGateTypeGet Gate Type from Saved Gate.
plotCytoplotCyto
plotCyto1dplotCyto1d
plotCyto1d-flowFrame-methodplotCyto1d - flowFrame Method
plotCyto1d-flowSet-methodplotCyto1d - flowSet Method
plotCyto2dplotCyto2d
plotCyto2d-flowFrame-methodplotCyto2d - flowFrame Method
plotCyto2d-flowSet-methodplotCyto2d - flowSet Method
plotCytoCompPlot Compensation
plotCytoComp-flowFrame-methodPlot Compensation - flowFrame Method
plotCytoComp-flowSet-methodPlot Compensation - flowSet Method
plotCytoComp-GatingSet-methodPlot Compensation - GatingSet Method
plotCytoExprsPlot Population Density Distribution in All Channels
plotCytoExprs-flowFrame-methodPlot Population Density Distribution in All Channels -...
plotCytoExprs-flowSet-methodPlot Population Density Distribution in All Channels -...
plotCytoExprs-GatingHierarchy-methodPlot Population Density Distribution in All Channels -...
plotCytoExprs-GatingSet-methodPlot Population Density Distribution in All Channels -...
plotCyto-flowFrame-methodplotCyto - flowFrame Method
plotCyto-flowSet-methodplotCyto - flowSet Method
plotCytoGatesPlot Flow Cytometry Gating Strategies
plotCytoGates-GatingHierarchy-methodPlot Flow Cytometry Gating Strategies - GatingHierarchy...
plotCytoGates-GatingSet-methodPlot Flow Cytometry Gating Strategies - GatingSet Method
plotCyto-GatingHierarchy-methodplotCyto - GatingHierarchy Method
plotCyto-GatingSet-methodplotCyto - GatingSet Method
plotGatesPlot Gate Objects onto an Existing Plot
plotGates-ellipsoidGate-methodPlot ellipsoidGate Objects onto an Existing Plot
plotGates-filters-methodPlot filters List of Gate Objects onto an Existing Plot
plotGates-list-methodPlot List of Gate Objects onto an Existing Plot
plotGates-polygonGate-methodPlot polygonGate Objects onto an Existing Plot
plotGates-rectangleGate-methodPlot rectangleGate Objects onto an Existing plot
plotLabelsPlot Labels for Gated Populations
plotLabels-flowFrame-ellipsoidGate-methodPlot Labels for Gated Populations - ellipsoidGate Method
plotLabels-flowFrame-filters-methodPlot Labels for Gated Populations - filters Method
plotLabels-flowFrame-list-methodPlot Labels for Gated Populations - list Method
plotLabels-flowFrame-polygonGate-methodPlot Labels for Gated Populations - polygonGate Method
plotLabels-flowFrame-rectangleGate-methodPlot Labels for Gated Populations - rectangleGate Method
removeGateRemove Gate(s) and Edit gatingTemplate .csv File
sampleFrameSample a flowFrame
selectChannelsSelect Fluorescent Channel for Compensation Controls
selectChannels-flowFrame-methodSelect Fluorescent Channel for Compensation Controls -...
selectChannels-flowSet-methodSelect Fluorescent Channel for Compensation Controls -...
selectChannels-GatingSet-methodSelect Fluorescent Channel for Compensation Controls -...
selectFramesSelect flowFrames Based on pData
DillonHammill/cytoSuite documentation built on Nov. 4, 2018, 2:03 a.m.