cyto_trans_check: Check Transformation List Object

In DillonHammill/cytoSuite: Compensation, Gating & Visualisation Toolkit for Analysis of Flow Cytometry Data

Description

Check Transformation List Object

Usage

cyto_trans_check(trans = NULL, inverse = FALSE)

Arguments

trans	object of class transformList or transformerList generated by estimateLogicle which was used to transform the fluorescent channels of the samples.
inverse	logical indicating whether the returned transformList should contain the inverse transformations.

Value

NULL or object of class transformList

Author(s)

Dillon Hammill, [e-mail]

Examples

library(CytoRSuiteData)

# Load in samples to flowSet
fs <- Activation

# Add fs to GatingSet
gs <- GatingSet(fs)

# Get transformList using estimateLogicle
trans <- estimateLogicle(fs[[4]], cyto_fluor_channels(fs))

# Get transformList containing inverse transformarions
inv <- cyto_trans_check(trans, inverse = TRUE)

# Convert transformerList into transformList
trans <- estimateLogicle(gs[[4]], cyto_fluor_channels(gs))

# Convert transformerList into inverse transformList
inv <- cyto_trans_check(trans, inverse = FALSE)

DillonHammill/cytoSuite documentation built on March 7, 2019, 10:09 a.m.