Description Usage Arguments Author(s) See Also Examples
Plot Expression Profile in All Fluorescent Channels - flowSet Method
1 2 3 4 |
x |
object of class |
channels |
a vector channels to use to construct the plots, set to all channels by default. |
group_by |
a vector of pData variables to sort and merge samples into groups, set to FALSE by default to prevent merging. To merge all samples set this argument to "all". |
axes_trans |
object of class
|
title |
a title for the plots, set to the file name of x by default. |
density_stack |
numeric [0,1] indicating the degree of offset for overlaid populations, set to 0.5 by default. |
... |
additional arguments passed to
|
Dillon Hammill (Dillon.Hammill@anu.edu.au)
cyto_plot_profile,flowFrame-method
cyto_plot_profile,GatingSet-method
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | library(CytoRSuiteData)
# Load in samples
fs <- Activation
gs <- GatingSet(fs)
# Apply compensation
gs <- compensate(gs, fs[[1]]@description$SPILL)
# Transform fluorescent channels
trans <- estimateLogicle(gs[[4]], cyto_fluor_channels(gs))
gs <- transform(gs, trans)
# Gate using gate_draw
gt <- Activation_gatingTemplate
gating(gt, gs)
# Plot expression profile in all channels
cyto_plot_profile(getData(gs, "T Cells"),
axes_trans = trans
)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.