Files in DillonHammill/cytoSuite
Compensation, Gating & Visualisation Toolkit for Analysis of Flow Cytometry Data

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/computeSpillover-methods.R R/computeStats-methods.R R/data.R R/drawGate-methods.R R/editSpillover-methods.R R/gating-functions.R R/gatingTemplate-modifiers.R R/geometric-functions.R R/helper-functions.R R/openCyto-functions.R R/openCyto-parsing-functions.R R/openCyto-plugins.R R/plotCyto-internal.R R/plotCyto-methods.R R/plotCytoComp-methods.R R/plotCytoExprs-methods.R R/plotCytoGates-methods.R R/plotGates-methods.R R/plotLabels-methods.R R/plotting-functions.R R/validation-functions.R R/zzz.R README.Rmd README.md
README_files/figure-markdown_github/unnamed-chunk-10-1.png
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README_files/figure-markdown_github/unnamed-chunk-24-1.png
README_files/figure-markdown_github/unnamed-chunk-25-1.png
data/Activation.rda
inst/extdata/Example-gatingTemplate.csv
man/Activation.Rd man/axisLabels-GatingHierarchy-method.Rd man/axisLabels-flowFrame-method.Rd man/axisLabels.Rd man/checkChannels-GatingSet-method.Rd man/checkChannels-flowFrame-method.Rd man/checkChannels-flowSet-method.Rd man/checkChannels.Rd man/checkOSGD.Rd man/checkTemplate.Rd man/computeSpillover-GatingSet-method.Rd man/computeSpillover-flowSet-method.Rd man/computeSpillover.Rd man/computeStats-GatingSet-method.Rd man/computeStats-flowFrame-method.Rd man/computeStats-flowSet-method.Rd man/computeStats.Rd man/drawBoundary.Rd man/drawEllipse.Rd man/drawGate-GatingSet-method.Rd man/drawGate-flowFrame-method.Rd man/drawGate-flowSet-method.Rd man/drawGate.Rd man/drawInterval.Rd man/drawPolygon.Rd man/drawQuadrants.Rd man/drawRectangle.Rd man/drawThreshold.Rd man/drawWeb.Rd man/editGate.Rd man/editSpillover-GatingSet-method.Rd man/editSpillover-flowSet-method.Rd man/editSpillover.Rd man/extractGate.Rd man/gate_draw.Rd man/gate_manual.Rd man/getChannels-GatingSet-method.Rd man/getChannels-flowFrame-method.Rd man/getChannels-flowSet-method.Rd man/getChannels.Rd man/getGateType.Rd man/plotCyto-GatingHierarchy-method.Rd man/plotCyto-GatingSet-method.Rd man/plotCyto-flowFrame-method.Rd man/plotCyto-flowSet-method.Rd man/plotCyto.Rd man/plotCyto1d-flowFrame-method.Rd man/plotCyto1d-flowSet-method.Rd man/plotCyto1d.Rd man/plotCyto2d-flowFrame-method.Rd man/plotCyto2d-flowSet-method.Rd man/plotCyto2d.Rd man/plotCytoComp-GatingSet-method.Rd man/plotCytoComp-flowFrame-method.Rd man/plotCytoComp-flowSet-method.Rd man/plotCytoComp.Rd man/plotCytoExprs-GatingHierarchy-method.Rd man/plotCytoExprs-GatingSet-method.Rd man/plotCytoExprs-flowFrame-method.Rd man/plotCytoExprs-flowSet-method.Rd man/plotCytoExprs.Rd man/plotCytoGates-GatingHierarchy-method.Rd man/plotCytoGates-GatingSet-method.Rd man/plotCytoGates.Rd man/plotGates-ellipsoidGate-method.Rd man/plotGates-filters-method.Rd man/plotGates-list-method.Rd man/plotGates-polygonGate-method.Rd man/plotGates-rectangleGate-method.Rd man/plotGates.Rd man/plotLabels-flowFrame-ellipsoidGate-method.Rd man/plotLabels-flowFrame-filters-method.Rd man/plotLabels-flowFrame-list-method.Rd man/plotLabels-flowFrame-polygonGate-method.Rd man/plotLabels-flowFrame-rectangleGate-method.Rd man/plotLabels.Rd man/removeGate.Rd man/sampleFrame.Rd man/selectChannels-GatingSet-method.Rd man/selectChannels-flowFrame-method.Rd man/selectChannels-flowSet-method.Rd man/selectChannels.Rd man/selectFrames.Rd
vignettes/CD4 CD8 T Cells.png
vignettes/Cells.png
vignettes/Live Cells.png
vignettes/Manipulation gatingTemplate Full.csv
vignettes/Manipulation gatingTemplate.csv
vignettes/MixedGates.gif
vignettes/MultiGates.gif
vignettes/Single Cells.png
vignettes/T Cells.png
vignettes/cytoSuite_Gate_Manipulation.Rmd vignettes/cytoSuite_Gating_Functions.Rmd
vignettes/drawBoundary1D.gif
vignettes/drawBoundary2D.gif
vignettes/drawEllipse.gif
vignettes/drawInterval1D.gif
vignettes/drawInterval2D.gif
vignettes/drawPolygon.gif
vignettes/drawQuadrants.gif
vignettes/drawRectangle.gif
vignettes/drawThreshold1D.gif
vignettes/drawThreshold2D.gif
vignettes/drawWeb.gif
vignettes/editGate1.png
vignettes/editGate2.png
vignettes/editGate3.png
vignettes/plotCyto.html
DillonHammill/cytoSuite documentation built on Nov. 4, 2018, 2:03 a.m.