Description Usage Arguments Value Author(s) Examples
View source: R/gatingTemplate-modifiers.R
Convert Old gatingTemplates to New Format
1 | gatingTemplate_convert(gs, gatingTemplate)
|
gs |
object of class GatingSet. |
gatingTemplate |
name of the gatingTemplate csv file to convert. |
converted gatingTemplate saved to .csv file.
Dillon Hammill, Dillon.Hammill@anu.edu.au
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 | ## Not run:
library(CytoRSuiteData)
# Load in samples
fs <- Activation
gs <- GatingSet(fs)
# Apply compensation
gs <- compensate(gs, fs[[1]]@description$SPILL)
# Transform fluorescent channels
trans <- estimateLogicle(gs[[4]], cyto_fluor_channels(fs))
gs <- transform(gs, trans)
# Convert gatingTemplate CytoRSuite <= 0.9.5 to new format
gatingTemplate_convert(gs, "gatingTemplate.csv")
# Updated gatingTemplate will work as expected
gt <- gatingTemplate("gatingTemplate.csv")
gating(gt, gs)
## End(Not run)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.