Description Usage Arguments Author(s) See Also Examples
Plot Expression Profile in All Fluorescent Channels - GatingSet Method
1 2 3 | ## S4 method for signature 'GatingSet'
cyto_plot_profile(x, parent = NULL,
channels = NULL, axes_trans = NULL, ...)
|
x |
object of class
|
parent |
name of the population used to construct the plot. |
channels |
a vector channels to use to construct the plots, set to all channels by default. |
axes_trans |
object of class
|
... |
additional arguments passed to
|
Dillon Hammill (Dillon.Hammill@anu.edu.au)
cyto_plot_profile,flowFrame-method
cyto_plot_profile,flowSet-method
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | library(CytoRSuiteData)
# Load in samples
fs <- Activation
gs <- GatingSet(fs)
# Apply compensation
gs <- compensate(gs, fs[[1]]@description$SPILL)
# Transform fluorescent channels
trans <- estimateLogicle(gs[[4]], cyto_fluor_channels(gs))
gs <- transform(gs, trans)
# Gate using gate_draw
gt <- Activation_gatingTemplate
gating(gt, gs)
# Plot expression profile in all channels
cyto_plot_profile(gs,
parent = "T Cells"
)
|
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