gate_remove: Remove Gate(s) and Edit gatingTemplate csv File

In DillonHammill/cytoSuite: Compensation, Gating & Visualisation Toolkit for Analysis of Flow Cytometry Data

Description

Remove Gate(s) and Edit gatingTemplate csv File

Usage

gate_remove(gs, alias = NULL, gatingTemplate = NULL)

Arguments

gs	an object of class GatingSet.
alias	name(s) of the population(s) to remove (e.g. "Single Cells"). By default all descendant populations will be removed as well.
gatingTemplate	name of the gatingTemplate csv file (e.g. "gatingTemplate.csv").

Value

an object of class gatingSet with gate and children removed, as well as gatingTemplate file with population removed.

Author(s)

Dillon Hammill, [e-mail]

Examples

## Not run: 
library(CytoRSuiteData)

# Load in samples
fs <- Activation
gs <- GatingSet(fs)

# Apply compensation
gs <- compensate(gs, fs[[1]]@description$SPILL)

# Transform fluorescent channels
trans <- estimateLogicle(gs[[4]], cyto_fluor_channels(gs))
gs <- transform(gs, trans)

# Gate using gate_draw
gt <- Activation_gatingTemplate
gating(gt, gs)

# Remove T Cells population - replace gatingTemplate name
gate_remove(gs, "T Cells", gatingTemplate = "gatingTemplate.csv")

## End(Not run)

DillonHammill/cytoSuite documentation built on March 7, 2019, 10:09 a.m.