BENCHMARK.MM: shell script for benchmarking

In Djeppschmidt/Model.Microbiome: Environment And Community Simulation Package

shell script for benchmarking

Description

shell script for benchmarking

Usage

BENCHMARK.MM(reps, commonN, groupN, singleN, D, V, method, interact)

Arguments

reps	number of replicate communities
commonN	number of common species
groupN	number of unique taxa to groups
singleN	number of unique taxa to samples
D	average sampling depth
V	variation in sampling depth
method	list of function names to be used in analysis

Examples

test.script<-benchmark.MM(reps=3, commonN=20, groupN=10, singleN=10, D=2000, V=1000)
benchmark.MM()

Djeppschmidt/Model.Microbiome documentation built on Sept. 17, 2022, 9:15 p.m.