Delta.sppcount: standardizes the taxon abundance by taking counts relative to...

In Djeppschmidt/Model.Microbiome: Environment And Community Simulation Package

standardizes the taxon abundance by taking counts relative to mean abundance of that taxon

Description

standardizes the taxon abundance by taking counts relative to mean abundance of that taxon

Usage

Delta.sppcount(ps, ref, method = 0)

Arguments

ps	phyloseq object with community to be normalized
ref	reference community to ensure even lost taxa are included
method	logical: 1 applies a exp() correction for log-transformed sample counts

Examples

Delta.sppcount()

Djeppschmidt/Model.Microbiome documentation built on Sept. 17, 2022, 9:15 p.m.