run.analysis3: workhorse function for simulate.MM

In Djeppschmidt/Model.Microbiome: Environment And Community Simulation Package

workhorse function for simulate.MM

Description

workhorse function for simulate.MM

Usage

run.analysis3(commonN, groupN, singleN, D, V, method, Spike, Interact)

Arguments

commonN	number of common species
groupN	number of unique taxa to groups
singleN	number of unique taxa to samples
D	average sampling depth
V	variation in sampling depth
method	list of function names to be applied as normalization
Spike	whether or not to use the spike in functions. If spike==T, then any normalization function that does not include using the spike in, should filter the spikein before doing other normalization steps.
Interact	logical should species interact

Examples

run.analysis3()

Djeppschmidt/Model.Microbiome documentation built on Sept. 17, 2022, 9:15 p.m.