Man pages for DomBennett/MoreTreeTools
Tools for manipulating phylogenetic trees
| addTip | Add a new tip to a phylogenetic tree |
| blockplot | Plot Blocks for Detecting Phylogenetic Signal (experimental) |
| calcBalance | Calculate balance of tree |
| calcCladeStats | Calculate clade stats |
| calcComPhyMets | Calculate Community Phylogenetic Metrics |
| calcDist | Calculate the distance between trees using different methods |
| calcED | Calculate Evolutionary Distinctness |
| calcEdgeDiversity | Calculate the diversity of edges within set time intervals |
| catarrhines | Phylogenetic tree of Catarrhini |
| chromatophylo | Plot tree through time with coloured edges |
| collapseTips | Remove all tips smaller than min.length |
| commplot | Plot a community or traits on a phylogenetic tree |
| EDBMMtrees | Simualated phylogenetic trees using EDBMM |
| evenCommData | Generate Evenly Distributed Data Based on Community Phylogeny |
| flowplot | Plot tree as turbulence flow image (experimental) |
| genCommData | Generate Clustered/Overdispersed Data Based on Community... |
| getAge | Get age of node or edge |
| getChildren | Get descendant species from a node |
| getClades | Get all children of each node |
| getCladeSuccess | Clade success through time |
| getEdges | Get edges |
| getEdgeStats | Get edge statistics |
| getExtant | Return extant tips |
| getNodeLabels | Get node labels based on online taxonomic database |
| getNodes | Get parent nodes |
| getNodeStats | Get node statistics |
| getOutgroup | Get outgroup in a tree from tips |
| getParent | Get parent node |
| getSister | Get sister node |
| getSize | Get the size of a phylogenetic tree |
| getSubtrees | Get non-redundant trees of clades from a phylogenetic tree |
| getTreeStats | Return large list of trees stats by node |
| hominoids | Phylogenetic tree of Hominoids |
| plotClades | Plot clade success through time |
| randCommData | Generate Random Community Data Based on Community Phylogeny |
| reBalance | Change balance of tree |
| reduceTree | Reduce tree by taxonomic rank |
| reGravitise | Change gravity of tree |
| removeTip | Remove a tip from a phylogenetic tree |
| taxaResolve | Resolve taxonmic names online |
| testclades | Uniform and arching clade richnesses through time |
