getSubtrees: Get non-redundant trees of clades from a phylogenetic tree

In DomBennett/MoreTreeTools: Tools for manipulating phylogenetic trees

Description

Extract subtrees from a phylogenetic tree within a specified range of number of tips, where each subtree returned has tips unique to it.

Usage

getSubtrees(tree, min.n, max.n, verbose = FALSE)

Arguments

tree	phylogenetic tree (ape class)
min.n	the minimum number of tips to return for each clade
max.n	the maximum number of tips to return for each clade
verbose	true or false

Details

This functions searches through all the nodes in a tree, it identifies all nodes that have numbers of descendents in the range specified by the user, it then returns the largest nodes for which all tips are unique to each subtree.

References

No references yet! https://github.com/DomBennett/MoreTreeTools.

Examples

# example.var <- exampleFun (test.data)

DomBennett/MoreTreeTools documentation built on May 6, 2019, 2:51 p.m.