calcCladeStats: Calculate clade stats
In DomBennett/MoreTreeTools: Tools for manipulating phylogenetic trees
Description
Usage
Arguments
Details
References
Description
Return a dataframe of stats for dataframe produced from getCladeSuccess().
Usage
1
calcCladeStats(clades)
Arguments
clades
dataframe where columns are clades and rows are numbers
of descendents by time step as returned by getCladeSuccess()
Details
The function calculates the following statistics for each clade:
tot.size: the total number of tips in the clade through time
max.size: the maximum number of tips in the clade in one time step
time.span: the number of time steps the clade existed
start: the starting time step
end: the ending time step
cm: the centre of mass of the clade
cg: the centre of gyration of the clade
References
Gould, S. J., Gilinsky, N. L., & German, R. Z. (1987). Asymmetry of
lineages and the direction of evolutionary time. Science (New York, N.Y.),
236(4807), 1437–1441.
DomBennett/MoreTreeTools documentation built on May 6, 2019, 2:51 p.m.
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Description Usage Arguments Details References
Description
Return a dataframe of stats for dataframe produced from getCladeSuccess().
Usage
1 | calcCladeStats(clades)
|
Arguments
clades |
dataframe where columns are clades and rows are numbers of descendents by time step as returned by getCladeSuccess() |
Details
The function calculates the following statistics for each clade:
tot.size: the total number of tips in the clade through time
max.size: the maximum number of tips in the clade in one time step
time.span: the number of time steps the clade existed
start: the starting time step
end: the ending time step
cm: the centre of mass of the clade
cg: the centre of gyration of the clade
References
Gould, S. J., Gilinsky, N. L., & German, R. Z. (1987). Asymmetry of lineages and the direction of evolutionary time. Science (New York, N.Y.), 236(4807), 1437–1441.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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