Man pages for EDIorg/taxonomyCleanr
A workflow and set of functions to clean taxonomy data using R
| count_taxa | Get counts of unique taxa |
| create_taxa_map | Create taxa map |
| get_authority | Get taxonomic authority |
| get_classification | Get the taxonomic classification hierarchy for taxa resolved... |
| get_id | Get taxonomic identifiers |
| get_id_common | Get taxonomic identifiers |
| load_gnr_datasources | Load and fix GNR Datasources |
| make_taxonomicCoverage | Make taxonomicCoverage EML node |
| optimize_match | Optimize match |
| optimize_match_common | Optimize match common |
| read_taxa_map | Read taxa map |
| remove_taxa | Remove taxa |
| replace_taxa | Replace taxa |
| resolve_comm_taxa | Resolve common names to an authority |
| resolve_sci_taxa | Resolve scientific names to an authority |
| revise_taxa | Revise taxonomic data |
| set_taxonomic_coverage | Create the taxonomicCoverage EML node |
| trim_taxa | Trim taxa |
| validate_arguments | Validate arguments of taxonomyCleanr functions |
| validate_path | Validate path |
| view_taxa_authorities | View taxonomic authorities |
| write_taxa_map | Write taxa map |
