revise_taxa: Revise taxonomic data

Description Usage Arguments Value

View source: R/revise_taxa.R

Description

Update the taxonomic information in your data table based on the mapping containted in taxa_map.csv. function.

Usage

1
revise_taxa(path, x, col, sep)

Arguments

path

A path of the directory containing taxa_map.csv and the raw data table.

x

A data frame containing the vector of taxa names to be updated.

col

A character string specifying the column in x containing taxa names to be updated.

sep

The column delimiter to use when writting the table to file. Can be comma or tab.

Value

A copy of your data table (taxonomyCleanr_output) containing appended columns containing:

Unresolvable taxa will have NA values for the appended columns.


EDIorg/taxonomyCleanr documentation built on Dec. 13, 2021, 7:48 p.m.