Files in EDIorg/taxonomyCleanr

A workflow and set of functions to clean taxonomy data using R

.github/.gitignore

.github/workflows/pkgdown.yaml

.gitignore

.travis.yml

AUTHORS.md CODE_OF_CONDUCT.md CONTRIBUTING.md

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/count_taxa.R R/create_taxa_map.R R/get_classification.R R/make_taxonomicCoverage.R R/remove_taxa.R R/replace_taxa.R R/resolve_comm_taxa.R R/resolve_sci_taxa.R R/revise_taxa.R R/trim_taxa.R R/validate_arguments.R R/view_taxa_authorities.R R/write_taxa_map.R README.md

_pkgdown.yml

codemeta.json

docs/404.html

docs/CODE_OF_CONDUCT.html

docs/CONTRIBUTING.html

docs/LICENSE-text.html

docs/articles/a_common_use_case.html

docs/articles/a_common_use_case_files/anchor-sections-1.0/anchor-sections.css

docs/articles/a_common_use_case_files/anchor-sections-1.0/anchor-sections.js

docs/articles/a_common_use_case_files/header-attrs-2.11/header-attrs.js

docs/articles/a_common_use_case_files/kePrint-0.0.1/kePrint.js

docs/articles/a_common_use_case_files/lightable-0.0.1/lightable.css

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Rplot001.png

docs/reference/count_taxa.html

docs/reference/create_taxa_map.html

docs/reference/get_authority.html

docs/reference/get_classification.html

docs/reference/get_id.html

docs/reference/get_id_common.html

docs/reference/index.html

docs/reference/load_gnr_datasources.html

docs/reference/make_taxonomicCoverage.html

docs/reference/optimize_match.html

docs/reference/optimize_match_common.html

docs/reference/read_taxa_map.html

docs/reference/remove_taxa.html

docs/reference/replace_taxa.html

docs/reference/resolve_comm_taxa.html

docs/reference/resolve_sci_taxa.html

docs/reference/revise_taxa.html

docs/reference/set_taxonomic_coverage.html

docs/reference/trim_taxa.html

docs/reference/validate_arguments.html

docs/reference/validate_path.html

docs/reference/view_taxa_authorities.html

docs/reference/write_taxa_map.html

docs/sitemap.xml

inst/example_data.txt

inst/taxa_map.csv

inst/taxa_map_resolve_sci_taxa/taxa_map.csv

inst/taxonomicCoverage.xml

inst/test_data.txt

man/count_taxa.Rd man/create_taxa_map.Rd man/get_authority.Rd man/get_classification.Rd man/get_id.Rd man/get_id_common.Rd man/load_gnr_datasources.Rd man/make_taxonomicCoverage.Rd man/optimize_match.Rd man/optimize_match_common.Rd man/read_taxa_map.Rd man/remove_taxa.Rd man/replace_taxa.Rd man/resolve_comm_taxa.Rd man/resolve_sci_taxa.Rd man/revise_taxa.Rd man/set_taxonomic_coverage.Rd man/trim_taxa.Rd man/validate_arguments.Rd man/validate_path.Rd man/view_taxa_authorities.Rd man/write_taxa_map.Rd

taxonomyCleanr.Rproj

tests/testthat.R tests/testthat/test_count_taxa.R tests/testthat/test_create_taxa_map.R tests/testthat/test_get_classification.R tests/testthat/test_make_taxonomicCoverage.R tests/testthat/test_remove_taxa.R tests/testthat/test_replace_taxa.R tests/testthat/test_resolve_comm_taxa.R tests/testthat/test_resolve_sci_taxa.R tests/testthat/test_revise_taxa.R tests/testthat/test_trim_taxa.R tests/testthat/test_validate_arguments.R tests/testthat/test_view_taxa_authorities.R tests/testthat/test_write_taxa_map.R

vignettes/.gitignore

vignettes/a_common_use_case.Rmd

EDIorg/taxonomyCleanr documentation built on April 9, 2023, 2:43 a.m.