replace_taxa: Replace taxa

In EDIorg/taxonomyCleanr: A workflow and set of functions to clean taxonomy data using R

Replace taxa

Description

Replace a taxon name with another.

Usage

replace_taxa(input, output, x = NULL, col = NULL, path = NULL)

Arguments

input	A character string specifying an existing taxon name.
output	A character string specifying a replacement taxon name.
x	(character vector or data frame) Data containing taxa to be removed.
col	(character) A character string specifying the column in x containing taxa names to be cleaned. NOTE: Don't use this argument if x is a vector of character strings.
path	(character) A character string specifying the path to taxa_map.csv.

Value

• 1. An updated version of taxa_map.csv with removed taxa names.

• 2. A data frame of taxa_map.csv with removed taxa names, if the path argument is supplied.

EDIorg/taxonomyCleanr documentation built on April 9, 2023, 2:43 a.m.