Is_A_Doublet: Is A Doublet

In EDePasquale/DoubletDecon: A Package to Identify Doublets and Doublet Clusters Based on Deconvolution Analysis and Unique Gene Expression

Description

This function uses deconvolution analysis (DeconRNASeq) to evaluate each cell for equal contribution from blacklisted clusters.

Usage

Is_A_Doublet(data, newMedoids, groups, synthProfiles, synth_DRS_results,
  log_file_name)

Arguments

data	Processed data from Clean_Up_Input (or Remove_Cell_Cycle).
newMedoids	New combined medoids from Blacklist_groups.
groups	Processed groups file from Clean_Up_Input.
synthProfiles	Average profiles of synthetic doublets from Synthetic_Doublets.
log_file_name	used for saving run notes to log file

Value

isADoublet - data.frame with each cell as a row and whether it is called a doublet by deconvolution analysis.

resultsreadable - data.frame with results of deconvolution analysis (cell by cluster) in percentages.

EDePasquale/DoubletDecon documentation built on Dec. 3, 2020, 10:44 p.m.