DDheatmap: DDHeatmap

In EDePasquale/DoubletDecon: A Package to Identify Doublets and Doublet Clusters Based on Deconvolution Analysis and Unique Gene Expression

Description

This function is a modified version of heatmap.2 from the gplots package (https://cran.r-project.org/package=gplots), corrected by ChristophH (https://github.com/ChristophH/gplots/blob/master/R/heatmap.2.R) to correct the issue of dendrogram generation even with row and column clustering off and dendrogram set to "none".

Usage

DDheatmap(x, Rowv = TRUE, Colv = if (symm) "Rowv" else TRUE,
  distfun = dist, hclustfun = hclust, dendrogram = c("both", "row",
  "column", "none"), reorderfun = function(d, w) reorder(d, w),
  symm = FALSE, scale = c("none", "row", "column"), na.rm = TRUE,
  revC = identical(Colv, "Rowv"), add.expr, breaks, symbreaks = any(x <
  0, na.rm = TRUE) || scale != "none", col = "heat.colors", colsep,
  rowsep, sepcolor = "white", sepwidth = c(0.05, 0.05), cellnote,
  notecex = 1, notecol = "cyan", na.color = par("bg"),
  trace = c("column", "row", "both", "none"), tracecol = "cyan",
  hline = median(breaks), vline = median(breaks), linecol = tracecol,
  margins = c(5, 5), ColSideColors, RowSideColors, cexRow = 0.2 +
  1/log10(nr), cexCol = 0.2 + 1/log10(nc), labRow = NULL,
  labCol = NULL, srtRow = NULL, srtCol = NULL, adjRow = c(0, NA),
  adjCol = c(NA, 0), offsetRow = 0.5, offsetCol = 0.5,
  colRow = NULL, colCol = NULL, key = TRUE, keysize = 1.5,
  density.info = c("histogram", "density", "none"), denscol = tracecol,
  symkey = any(x < 0, na.rm = TRUE) || symbreaks, densadj = 0.25,
  key.title = NULL, key.xlab = NULL, key.ylab = NULL,
  key.xtickfun = NULL, key.ytickfun = NULL, key.par = list(),
  main = NULL, xlab = NULL, ylab = NULL, lmat = NULL,
  lhei = NULL, lwid = NULL, extrafun = NULL, ...)

EDePasquale/DoubletDecon documentation built on Dec. 3, 2020, 10:44 p.m.