Pseudo_Marker_Finder: Pseudo MarkerFinder

In EDePasquale/DoubletDecon: A Package to Identify Doublets and Doublet Clusters Based on Deconvolution Analysis and Unique Gene Expression

Description

This function uses ANOVA to look for unique gene expression in each possible doublet cluster.

Usage

Pseudo_Marker_Finder(groups, redu_data2, full_data2, min_uniq = 4,
  log_file_name = log_file_name, nCores = -1)

Arguments

groups	Processed groups file from Clean_Up_Input.
redu_data2	Processed data from Clean_Up_Input (or Remove_Cell_Cycle) path, automatically written.
full_data2	cleaned full expression matrix from Clean_Up_Input.
min_uniq	minimum number of unique genes required for a cluster to be rescued
log_file_name	used for saving run notes to log file
nCores	number of cores to be used during rescue step. Default is -1 for automatically detected.

Value

new_table - non-doublet clusters, as determined by the "Remove" and "Rescue" steps.

EDePasquale/DoubletDecon documentation built on Dec. 3, 2020, 10:44 p.m.