Recluster: Recluster

In EDePasquale/DoubletDecon: A Package to Identify Doublets and Doublet Clusters Based on Deconvolution Analysis and Unique Gene Expression

Description

This function reclusters doublets and non doublets seperately based on deconvolution analysis and returns a new expression file, groups file, and DeconFreq table for downstream analyses.

Usage

Recluster(isADoublet, data, groups, log_file_name)

Arguments

isADoublet	isADoublet data.frame from Is_A_Doublet.
data	Processed data from Clean_Up_Input (or Remove_Cell_Cycle).
groups	Processed groups file from Clean_Up_Input.
log_file_name	used for saving run notes to log file

Value

newData2 - processed expression and groups file, reordered, with correct new cluster numbers.

decon - DeconCalledFreq table with all doublets 100 percent doublet and all non doublets at 0 percent doublet frequency.

EDePasquale/DoubletDecon documentation built on Dec. 3, 2020, 10:44 p.m.