exampleProcessedPeakData: Processed FTICR Data Object of Class peakData

In EMSL-Computing/fticRanalysis: Analysis and visualization tools for FT-MS data

Processed FTICR Data Object of Class peakData

Description

An S3 object of class peakData

Format

A peakData object (see as.peakData for details)

e_data

a p \times n + 1 data.frame of expression data, where p is the number of peaks observed and n is the number of samples. Each row corresponds to data for each peak/mass

f_data

a data.frame with n s. Each row corresponds to a sample with one column giving the unique sample identifiers found in e_data column names and other columns providing qualitative and/or quantitative traits of each sample.

e_meta

a p \times 10 data.frame of meta information for each peak/mass.

Details

Created by running the following commands:

exampleProcessedPeakData <- group_designation(examplePeakData, main_effects=c("Location", "Crop.Flora"))
exampleProcessedPeakData <- compound_calcs(exampleProcessedPeakData)
exampleProcessedPeakData <- applyFilt(mass_filter(exampleProcessedPeakData), exampleProcessedPeakData, min_mass=200, max_mass=900)
exampleProcessedPeakData <- applyFilt(molecule_filter(exampleProcessedPeakData), exampleProcessedPeakData, min=2)

EMSL-Computing/fticRanalysis documentation built on Dec. 18, 2024, 9:51 p.m.