custom.sim.cell.expr: custom.sim.cell.expr

In ERGlass/lrcde.dev: Linear Regression Cell Type-Specific Differential Expression Power Analysis

Description

Called from a user wrapper script (see example 'lrcde.wrapper.sims.R').

Usage

custom.sim.cell.expr(num.cells = 5, base.expr.vec, diff.2.model.vec, cell.p,
  len.mse.vec)

Arguments

num.cells	Number of cell types to simulate.
base.expr.vec	Control group expression level to simulate at the cell type-specific level.
diff.2.model.vec	Absolute difference between control group and cases group to simulate at the cell type-specific level.
cell.p	Number of cell type to alter between controls and cases for simulation purposes.
len.mse.vec	Total length of the MSE vector (used to calculate needed number of repeats of permutations of base and difference.)

Value

cell.expr Cell expressions matrix.

Author(s)

Edmund R Glass, [e-mail]

References

https://github.com/ERGlass/lrcde.dev

Examples

custom.sim.cell.expr( num.cells.2.simulate, base.expression.vector, difference.2.simulate.vector, cell.2.modify, len.mse.vec )

ERGlass/lrcde.dev documentation built on May 6, 2019, 3:09 p.m.