get.permuted.p.values: get.permuted.p.values

In ERGlass/lrcde.dev: Linear Regression Cell Type-Specific Differential Expression Power Analysis

Description

Called from sim_driver_script

Usage

get.permuted.p.values(diff.perms.func, diffs.func, alt.is, cell.p)

Arguments

diff.perms.func	Differential expression estimates from permutations (a 3D array: permutations by cell types by genomic sites).
diffs.func	Differential expression estimates from group label non-permuted observations.
alt.is	Defaults to 'greater' to test for up-regulation of a genomic site. All differences are modled by absolute value, so default is 'greater'.
cell.p	Integer of cell type being tested for differences between truth (diffs.func) and permuted differences (diff.perms.func).

Value

sig.perms.func Vector of permutation p.values for each genomic site.

Author(s)

Edmund R Glass, [e-mail], Mikhail G Dozmorov, [e-mail]

References

https://github.com/ERGlass/ERGmisc

Examples

get.permuted.p.values(  diff.perms.func, diffs.func, alt.is, cell.p  )

ERGlass/lrcde.dev documentation built on May 6, 2019, 3:09 p.m.