Description Usage Arguments Value Author(s) References Examples
View source: R/get.permuted.p.values.R
Called from sim_driver_script
1 | get.permuted.p.values(diff.perms.func, diffs.func, alt.is, cell.p)
|
diff.perms.func |
Differential expression estimates from permutations (a 3D array: permutations by cell types by genomic sites). |
diffs.func |
Differential expression estimates from group label non-permuted observations. |
alt.is |
Defaults to 'greater' to test for up-regulation of a genomic site. All differences are modled by absolute value, so default is 'greater'. |
cell.p |
Integer of cell type being tested for differences between truth (diffs.func) and permuted differences (diff.perms.func). |
sig.perms.func Vector of permutation p.values for each genomic site.
Edmund R Glass, Edmund.Glass@gmail.com, Mikhail G Dozmorov, Mikhail.Dozmorov@vcuhealth.org
https://github.com/ERGlass/ERGmisc
1 | get.permuted.p.values( diff.perms.func, diffs.func, alt.is, cell.p )
|
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