aggAtlasExport: Aggregate filtered final Atlas export

In EU-ECDC/EpiSignalDetection: Signal Detection Analysis

Description

Aggregate filtered final Atlas export

Usage

aggAtlasExport(x, input)

Arguments

x	dataframe
input	list of parameters as defined in the Signal Detection Application (see runEpiSDApp) (i.e. list(disease, country, indicator, stratification, unit, daterange, algo, testingperiod))

Value

dataframe aggregated by geographical level and time unit

See Also

filterAtlasExport SignalData stsSD

Examples

#-- Setting the parameters to run the report for
input <- list(
disease = "Salmonellosis",
country = "EU-EEA - complete series",
indicator = "Reported cases",
stratification = "Confirmed cases",
unit = "Month",
daterange = c("2010-01-01", "2016-12-31"),
algo = "FarringtonFlexible",
testingperiod = 5
)

#-- Example dataset
dataset <- EpiSignalDetection::SignalData

#-- Filtering on declared input parameters
dataset <- filterAtlasExport(dataset, input)

#-- Aggregating the data by geographical level and time point
dataset <- aggAtlasExport(dataset, input)

EU-ECDC/EpiSignalDetection documentation built on May 26, 2019, 2:36 a.m.