display_corrected_trees: Title
In EcoFoG/ForestData: Post-inventory processing of Forest Census datasets

View source: R/display_corrected_sizes.R

display_corrected_sizes allows to visualise the corrections performed on tree size measurements using ggplot2 utilities to make a points graph displaying raw (uncorrected) and corrected measurement series for censused trees, with all the specified relevant information.

display_corrected_trees(
  data,
  code_corr_col = "code_corr",
  size_corr_col = "size_corr",
  size_col,
  plot_col = "plot",
  measure_type = "Circ",
  time_col = "CensusYear",
  status_corr_col = "status_corr",
  id_col = "id",
  info_cols = c("species", "plot"),
  path_save = "./graphs",
  name = "diameter_corrections_",
  tag_pom = FALSE,
  create_folder = TRUE,
  overwrite = TRUE,
  device = "jpeg",
  save_graph = TRUE
)

`data`	data.frame, containing forest inventories in the form of a long-format time series - one line corresponds to a measurement for one individual at a given census time.
`code_corr_col`	Single character, the name of the column containing tree correction codes (see the output of correct_size)
`size_corr_col`	Single character, the name of the column containing tree corrected size measurements
`size_col`	character, name of the column corresponding to tree size (circumference or diameter) measurements .
`plot_col`	character, name of the column containing plot indices or names.
`measure_type`	character, partially matching “Circumference” or “Diameter”, indicating what is the type of the measurements.
`time_col`	character, name of the column containing census years.
`status_corr_col`	Single character, the name of the column containing tree corrected status
`id_col`	character, name of the column containing trees unique IDs.
`info_cols`	Single or multiple character, the name(s) of the column containing the information that has to appear in the graphs' subtitle.
`path_save`	Relevant if `save_graph=TRUE`. Character, a path indicating in which FOLDER the graph has to be saved.
`name`	Relevant if `save_graph=TRUE`. Character, the name of the folder containing the graph. It can be followd by the extension corresponding to the device - avoid .jpg for the jpeg device, use .jpeg instead. If the extension is missing, it is automatically added according to the selected device.
`tag_pom`	Logical, whether POM shifts should be displayed with a vertical line on the graph, or not. Use only if you have a POm field in your dataset.
`create_folder`	Relevant if `save_graph=TRUE`. Logical, indicated whether the folders in the given path must be created in case they do not exist yet, or not.
`overwrite`	Relevant if `save_graph=TRUE`. Logical, indicating whether a file already existing under the same name must be overwritten, or kept. In the second case, the function aborts with an explicit error message.
`device`	Relevant if `save_graph=TRUE`. Character, the graphical device to be used to save the graph.
`save_graph`	Logical, indicates whether the graph must be saved or not. Defaults to `FALSE`. If `TRUE`, please set the above described arguments in an appropriate way.